Browse Element(s) Details


Os.53678.1.S1_at

Description gb:AK073881.1
DB_XREF= gi:32983904
TID=Os.53678.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53678 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074F15, full insert sequence.
FL= gb:AK073881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1969411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed
LOC_Os08g19710NANA8+11795807..11798967hypothetical protein
LOC_Os08g19720OsAffx.8279.1.S1_at1/118+11799424..11804598retrotransposon protein, putative, unclassified
LOC_Os08g19730OsAffx.16451.1.A1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19730Os.45161.1.A1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19730OsAffx.31867.1.S1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19740NANA8+11810195..11811119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19750OsAffx.1755.1.S1_x_at3/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.1755.1.S1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.21269.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.29073.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.8747.3.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.26189.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.55580.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.31613.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53678.1.S1_at--459--7812Chr08:11779762..11779786 (25 bp)
GGTCTCTTTGCATATCATTGGGAAC
LOC_Os08g19694
Os.53678.1.S1_at--1122--1391Chr08:11779734..11779758 (25 bp)
AGAAATTACCAACACTCGATCCATC
LOC_Os08g19694
Os.53678.1.S1_at--489--4051Chr08:11779718..11779742 (25 bp)
CGATCCATCCTACTCACAAGATTAT
LOC_Os08g19694
Os.53678.1.S1_at--1001--10371Chr08:11779663..11779687 (25 bp)
TTTTCAGCGTATCTGCACTTGTCAT
LOC_Os08g19694
Os.53678.1.S1_at--460--4891Chr08:11779578..11779602 (25 bp)
GCTTTAGCTCTGTATTTTTCCATCA
LOC_Os08g19694
Os.53678.1.S1_at--857--3171Chr08:11779530..11779554 (25 bp)
AATTGGATATCCTTCTTTTTGCTAA
LOC_Os08g19694
Os.53678.1.S1_at--833--7111Chr08:11779447..11779471 (25 bp)
GTCAGTTTCCTCTTCAAAATGTCAT
LOC_Os08g19694
Os.53678.1.S1_at--1043--6931Chr08:11779332..11779356 (25 bp)
GTAGACTTGTACTTCGTTTTCTTGT
LOC_Os08g19694
Os.53678.1.S1_at--498--10551Chr08:11779314..11779338 (25 bp)
TTCTTGTTTTCGTTTTTCTCAGGAG
LOC_Os08g19694
Os.53678.1.S1_at--854--9731Chr08:11779260..11779284 (25 bp)
TAATTTCGTTTCCTTGTGCGCGGAA
LOC_Os08g19694
Os.53678.1.S1_at--512--4471Chr08:11779226..11779250 (25 bp)
GCCTCCTGGATCATTCTGTACTATT
LOC_Os08g19694
Target Sequence 
GGTCTCTTTGCATATCATTGGGAACAGTAGAAATTACCAACACTCGATCCATCCTACTCACAAGATTATCAACAAGATTA
GACATGAGGACATAAATCTTTTTCAGCGTATCTGCACTTGTCATCAGAAAGAGATAACCAAAGGCTAACAAGCATATATC
CTTGTAAGTTTGTCAAATTATATCGCTTTAGCTCTGTATTTTTCCATCATATGTTGTTTACATGCATGTAACAATTGGAT
ATCCTTCTTTTTGCTAATTTCCAGTGTTAGGAAGAGTCCTTCGAAGTGAAAGTTGTACGATGTCATCGACGAAGAGTCAG
TTTCCTCTTCAAAATGTCATCGACAATCATAAACCAATTCTGCAATATGACATTGCGAAAGTGATTTCCTTCTGTTTGCA
ATTTTTACACAATGCGCAAATTACCTGTAAGTAGACTTGTACTTCGTTTTCTTGTTTTCGTTTTTCTCAGGAGTCGGGTG
TTGACGTGTTGTAGTTCGTCATTAATTTCGTTTCCTTGTGCGCGGAAATGCGACCCGCCTCCTGGATCATTCTGTACTAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis