Browse Element(s) Details


Os.6202.1.S1_a_at

Description gb:AK060948.1
DB_XREF= gi:32970966
TID=Os.6202.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycoprotein (P0434B04.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F04, full insert sequence.
FL= gb:AK060948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0567011/113-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006665biological_processsphingolipid metabolism
GO:0010025biological_processwax biosynthesis
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009923cellular_componentfatty acid elongase complex
GO:0003865molecular_function3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6202.1.S1_a_at--183--2051Chr01:2705084..2705108 (25 bp)
ACTTTTATTGCCATATCCTGCTGAG
LOC_Os01g05670
Os.6202.1.S1_a_at--486--7051Chr01:2705039..2705063 (25 bp)
GTAACGGTGGCTATCAGATTCCTCG
LOC_Os01g05670
Os.6202.1.S1_a_at--776--5731Chr01:2704933..2704957 (25 bp)
GACTGTGGCAGGTTACATCTTCCTT
LOC_Os01g05670
Os.6202.1.S1_a_at--449--431Chr01:2704917..2704941 (25 bp)
ATCTTCCTTGTTGTGGCAGCGAGTA
LOC_Os01g05670
Os.6202.1.S1_a_at--433--6911Chr01:2704733..2704757 (25 bp)
GTATCCTCGGCGATGGGTGATTCTT
LOC_Os01g05670
Os.6202.1.S1_a_at--1049--111Chr01:2704714..2704738 (25 bp)
ATTCTTCCACCATTCCTGTAAGGAG
LOC_Os01g05670
Os.6202.1.S1_a_at--186--1251Chr01:2704691..2704715 (25 bp)
AGTTGGTGTCAGCACGATGGCCACA
LOC_Os01g05670
Os.6202.1.S1_a_at--831--6591Chr01:2704663..2704687 (25 bp)
GATTGAATCTTTGGTCTGGTCTCAG
LOC_Os01g05670
Os.6202.1.S1_a_at--1070--7431Chr01:2704616..2704640 (25 bp)
GTGTACCACTTCTATTCTATGATCT
LOC_Os01g05670
Os.6202.1.S1_a_at--506--8211Chr01:2704572..2704596 (25 bp)
GGAATCCCTCTTAGCTATTGTTGAA
LOC_Os01g05670
Os.6202.1.S1_a_at--447--9551Chr01:2704543..2704567 (25 bp)
TCTTTGAGTTTGCATTGGCCCTGTT
LOC_Os01g05670
Target Sequence 
ACTTTTATTGCCATATCCTGCTGAGGAACCTCAGAAGTCCGAGTGGTAACGGTGGCTATCAGATTCCTCGTGGCTTCCTG
TTNNACATAGTGACATGCGCAAACTATACCACTGAGATCTACCAATGGCTTGGGTTCAACATTGCCACACAGACTGTGGC
AGGTTACATCTTCCTTGTTGTGGCAGCGAGTATCATGACCAACTGGGCACTTGGAAAGCACCGCCGTCTAAAGAAGNNNN
NNNNNTTGTTCGATGGCAAGGAAGGGAGGCCGAAGTATCCTCGGCGATGGGTGATTCTTCCACCATTCCTGTAAGGAGTT
GGTGTCAGCACGATGGCCACATGGGATTGAATCTTTGGTCTGGTCTCAGTGTTCGGAAGTTGAAGCCTTCAGTGTACCAC
TTCTATTCTATGATCTAAAATATCTAGTCCACAATGGAATCCCTCTTAGCTATTGTTGAACTTCTCTTTGAGTTTGCATT
GGCCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6202.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis