Browse Element(s) Details


OsAffx.11123.1.S1_at

Description tigr:9629.m01950
TID=OsAffx.11123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1995011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19910OsAffx.11122.1.S1_at11/111+11304062..11304592hypothetical protein
LOC_Os01g19920OsAffx.22708.1.S1_x_at5/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.5.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_at2/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.3.S1_x_at9/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.4.S1_x_at7/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19940Os.8545.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.49258.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.8545.1.S1_s_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_x_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19950OsAffx.11123.1.S1_at11/111+11318619..11319530hypothetical protein
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11123.1.S1_at--741--1051Chr01:11318851..11318875 (25 bp)
AGGGTGAGAACGAGCTCGCCAACGT
LOC_Os01g19950
OsAffx.11123.1.S1_at--877--2591Chr01:11318843..11318867 (25 bp)
AACGAGCTCGCCAACGTTGGGCAGC
LOC_Os01g19950
OsAffx.11123.1.S1_at--1053--4791Chr01:11318838..11318862 (25 bp)
GCTCGCCAACGTTGGGCAGCAACAG
LOC_Os01g19950
OsAffx.11123.1.S1_at--194--5151Chr01:11318820..11318844 (25 bp)
GCAACAGCGGCGTGGCAAGGAAGCT
LOC_Os01g19950
OsAffx.11123.1.S1_at--140--2691Chr01:11318800..11318824 (25 bp)
AAGCTGGTGCTGTGCGCGGATGGGT
LOC_Os01g19950
OsAffx.11123.1.S1_at--949--8371Chr01:11318774..11318798 (25 bp)
GGCGATGAGCGCCAACACGGATTGG
LOC_Os01g19950
OsAffx.11123.1.S1_at--84--851Chr01:11318740..11318764 (25 bp)
ATGGACTCGGTGGAACAGGGATAAC
LOC_Os01g19950
OsAffx.11123.1.S1_at--890--2451Chr01:11318718..11318742 (25 bp)
AACAATGAGGTTAGGTGTCAGATCC
LOC_Os01g19950
OsAffx.11123.1.S1_at--1055--991Chr01:11318711..11318735 (25 bp)
AGGTTAGGTGTCAGATCCTCCGCCA
LOC_Os01g19950
OsAffx.11123.1.S1_at--1126--9551Chr01:11318680..11318704 (25 bp)
TCTTCCCTTCTTCTCGTGGTGGTGT
LOC_Os01g19950
OsAffx.11123.1.S1_at--78--8631Chr01:11318664..11318688 (25 bp)
TGGTGGTGTCCTCGCGGGCAACCGC
LOC_Os01g19950
Target Sequence 
AGGGTGAGAACGAGCTCGCCAACGTTGGGCAGCAACAGCGGCGTGGCAAGGAAGCTGGTGCTGTGCGCGGATGGGTCGGC
GATGAGCGCCAACACGGATTGGGGGACGACGATGGACTCGGTGGAACAGGGATAACAATGAGGTTAGGTGTCAGATCCTC
CGCCACCACCATCTTCCCTTCTTCTCGTGGTGGTGTCCTCGCGGGCAACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis