Browse Element(s) Details


OsAffx.11639.1.S1_at

Description tigr:9629.m05677
TID=OsAffx.11639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5791011/11YOR3513c, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11639.1.S1_at--427--10751Chr01:33809753..33809777 (25 bp)
TTGACATCGCAGATGCCGTTGCATT
LOC_Os01g57910
OsAffx.11639.1.S1_at--937--231Chr01:33809611..33809635 (25 bp)
ATACGCCATTGAGAATTCTACCAGG
LOC_Os01g57910
OsAffx.11639.1.S1_at--1021--5711Chr01:33809587..33809611 (25 bp)
GACTCGCATAGTTATTGCTGACACA
LOC_Os01g57910
OsAffx.11639.1.S1_at--953--4751Chr01:33809571..33809595 (25 bp)
GCTGACACAAAGATCCACATACTTG
LOC_Os01g57910
OsAffx.11639.1.S1_at--675--3811Chr01:33809489..33809513 (25 bp)
CTCCTGCTGGCAAAGTGTATTCAAA
LOC_Os01g57910
OsAffx.11639.1.S1_at--356--6851Chr01:33809473..33809497 (25 bp)
GTATTCAAAGCTAAGGGCCGTTTCT
LOC_Os01g57910
OsAffx.11639.1.S1_at--297--4511Chr01:33809457..33809481 (25 bp)
GCCGTTTCTGCCAGGTTGGCTGAAA
LOC_Os01g57910
OsAffx.11639.1.S1_at--171--10191Chr01:33809283..33809307 (25 bp)
TTTTCTACCGCCTGTTTGAGGGAAT
LOC_Os01g57910
OsAffx.11639.1.S1_at--271--4391Chr01:33809188..33809212 (25 bp)
GCCAGAAACCTGATAAGTTGCTTCC
LOC_Os01g57910
OsAffx.11639.1.S1_at--288--1231Chr01:33809173..33809197 (25 bp)
AGTTGCTTCCTAGAATTGTCACCCC
LOC_Os01g57910
OsAffx.11639.1.S1_at--302--1811Chr01:33809153..33809177 (25 bp)
ACCCCGTTCCTTCAGAATGCAAGAA
LOC_Os01g57910
Target Sequence 
TTGACATCGCAGATGCCGTTGCATTGCTCCGCCTTGATGACTTGTATGTGGATTCCTTCGAGATCAAGGATGTGAAGACA
CTCCGGGGTGAGCATCTGTCACGTGCTATTGGCCGTTTGTCAGGGAAAGGAGGCAAGACCAAATACGCCATTGAGAATTC
TACCAGGACTCGCATAGTTATTGCTGACACAAAGATCCACATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATT
CACTCTGTAGTCTCATCTTAGGTTCTCCTGCTGGCAAAGTGTATTCAAAGCTAAGGGCCGTTTCTGCCAGGTTGGCTGAA
AGTAATAGATTTGTAATGATATGCCTTTTCTACCGCCTGTTTGAGGGAATGTGCCAGAAACCTGATAAGTTGCTTCCTAG
AATTGTCACCCCGTTCCTTCAGAATGCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis