Browse Element(s) Details


OsAffx.11640.1.S1_at

Description tigr:9629.m05678
TID=OsAffx.11640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5792011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57854Os.27505.1.S1_at11/111+33780283..33786927Pectinesterase family protein, expressed
LOC_Os01g57870Os.42318.1.S1_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57870Os.42318.2.S1_x_at11/111+33787267..33790602NB-ARC domain containing protein, expressed
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11640.1.S1_at--932--8031Chr01:33812797..33812821 (25 bp)
GGAGTACTTTTATCTGCCAAGACAC
LOC_Os01g57920
OsAffx.11640.1.S1_at--971--5611Chr01:33812777..33812801 (25 bp)
GACACTCGCACTATTTGGTTCTGAC
LOC_Os01g57920
OsAffx.11640.1.S1_at--688--7891Chr01:33812273..33812785 (25 bp)
GGTTCTGACGTCAAGTTCTTAGTTA
LOC_Os01g57920
OsAffx.11640.1.S1_at--720--10051Chr01:33812254..33812278 (25 bp)
TAGTTATGACTTGCTCACTCACTCA
LOC_Os01g57920
OsAffx.11640.1.S1_at--247--3831Chr01:33812204..33812228 (25 bp)
CTGCCGGCATGTCCAGTGTTTGAGA
LOC_Os01g57920
OsAffx.11640.1.S1_at--437--8511Chr01:33811928..33811952 (25 bp)
TGGAATGACCTTCCAATGTCCGTTC
LOC_Os01g57920
OsAffx.11640.1.S1_at--628--771Chr01:33811913..33811937 (25 bp)
ATGTCCGTTCCTTGAGACTGTCATA
LOC_Os01g57920
OsAffx.11640.1.S1_at--866--1631Chr01:33811773..33811797 (25 bp)
AGCGGGCTGAGAACAGGCGCATCAT
LOC_Os01g57920
OsAffx.11640.1.S1_at--470--971Chr01:33811734..33811758 (25 bp)
AGGAGCTGTGCAACTTCGAGAAGAT
LOC_Os01g57920
OsAffx.11640.1.S1_at--489--791Chr01:33811691..33811715 (25 bp)
ATGGGTCGACGAAAGCCGTTATGCT
LOC_Os01g57920
OsAffx.11640.1.S1_at--1139--4491Chr01:33811677..33811701 (25 bp)
GCCGTTATGCTGACAGTAACCCTGA
LOC_Os01g57920
Target Sequence 
GGAGTACTTTTATCTGCCAAGACACTCGCACTATTTGGTTCTGACGTCAAGTTCTTAGTTATGACTTGCTCACTCACTCA
ATACAAGGTTATGTTGGAAAAGGAGCTGCCGGCATGTCCAGTGTTTGAGAGGCTCACAACTCTTGAAATTGCAAGAAAAG
GAGCAGAAACAGATGCTATGCCAATTGATGGAATGACCTTCCAATGTCCGTTCCTTGAGACTGTCATAATACAATGTTCC
AAGGGCGATGATGGGATCAACAAGCTGGTGAATGTTCTGGCAGCAAATGGGATTAACCCAAAGAAGATACAGGTTAATTT
CTATGAAGATATCGAAGAGATGGAGCGGGCTGAGAACAGGCGCATCATAGAGGAGCGGGAGAAGGAGCTGTGCAACTTCG
AGAAGATGGCGAAGAAAAACCCAGAATGGGTCGACGAAAGCCGTTATGCTGACAGTAACCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis