Browse Element(s) Details


OsAffx.11817.1.S1_x_at

Description gb:NM_189752.1
DB_XREF= gi:34906587
GEN=P0660F12.24
TID=OsAffx.11817.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST D23882(R0503)~similar to GABA permease~unknown protein (P0660F12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7170011/11amino acid permease family protein, putative
LOC_Os01g717401/11Amino acid permease family protein, expressed
LOC_Os01g717101/11Amino acid permease family protein
LOC_Os01g717601/11amino acid permease family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015326molecular_functioncationic amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11817.1.S1_x_at--1061--1231Chr01:41876690..41876714 (25 bp)
AGTTGGAGGGATCGTCTGCTTGGGA
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--421--4651Chr01:41876633..41876652 (20 bp)
GCGTCACCAGCAATTCGAGGATGGC
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--1159--5191Chr01:41876527..41876643 (25 bp)
GCAATTCGAGGATGGCGTACGCCTT
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--825--8971Chr01:41876458..41876482 (25 bp)
TGAACAAGCACGAGGTGCCCCTCAA
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--196--9414Chr03:33713739..33713852 (24 bp)
TCGTCATGGCTCTCACGTCGCTGGG
NONE
OsAffx.11817.1.S1_x_at--1122--5731Chr01:41876202..41876226 (25 bp)
GACGGCTCGGAGATCGTTCGTGCCA
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--81--9951Chr01:41876081..41876105 (25 bp)
TACCCGGTGGCCAACAAGGAGACAT
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--59--10512Chr01:41878981..41879005 (25 bp)
TTCAACTACACTCCGGTGGCCGTCG
LOC_Os01g71710
OsAffx.11817.1.S1_x_at--837--4011Chr01:41876037..41876061 (25 bp)
CGTCGGCGGCGTGTTATTGCTCAGT
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--293--8791Chr01:41876026..41876050 (25 bp)
TGTTATTGCTCAGTGTTGGTGCGTG
LOC_Os01g71700
OsAffx.11817.1.S1_x_at--668--9131Chr01:41876007..41876031 (25 bp)
TGCGTGGGTGCTACGTGCCCGCTTC
LOC_Os01g71700
Target Sequence 
AGTTGGAGGGATCGTCTGCTTGGGAGCCGTCGCCGTCGCCGTCTTCCTCTGCGGCATCGCGTGCGTCACCAGCAATTCGA
GGATGGCGTACGCCTTCTCCAGAGACGGGGCGATGCCGTTGTCGCGCGTGTGGTACCGGGTGAACAAGCACGAGGTGCCC
CTCAACGTCGTCTGGCTCGGCGTCGCCGTGGCGTTCGTCATGGCTCTCACGTCGCTGGGGAGCCAGGTGGCGTTCCAGGC
GATGGGTTCGATCGCGACGCTGGGGATGTACATCGCGTACGCGCTGCCCGTGTTCTTCCGCGTGACGACGGCTCGGAGAT
CGTTCGTGCCAGGGCCGTTCCACCTCGGGCGATACGGGGTCGTCGTCGGCTGGGCGGGTGTGGTGTGGGTGGCCACCGTC
ACGGTGCTCTTCTCGCTGCCGGTGGCGTACCCGGTGGCCAACAAGGAGACATTCAACTACACTCCGGTGGCCGTCGGCGG
CGTGTTATTGCTCAGTGTTGGTGCGTGGGTGCTACGTGCCCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11817.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis