Browse Element(s) Details


OsAffx.23836.1.S1_at

Description tigr:9629.m05717
TID=OsAffx.23836.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5827011/11Subtilisin N-terminal Region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23836.1.S1_at--49--5571Chr01:34005877..34005901 (25 bp)
GAAAGCTCTGCATCCAAGCTGGTCA
LOC_Os01g58270
OsAffx.23836.1.S1_at--852--9791Chr01:34006030..34006054 (25 bp)
TAACTGATGAGCGTGGCATGCCCAT
LOC_Os01g58270
OsAffx.23836.1.S1_at--383--8851Chr01:34006133..34006157 (25 bp)
TGATCCTGGCCTGATTTACGACATT
LOC_Os01g58270
OsAffx.23836.1.S1_at--371--611Chr01:34006216..34006240 (25 bp)
ATGCGACATCGTTGCCTGGGTATTA
LOC_Os01g58270
OsAffx.23836.1.S1_at--92--7871Chr01:34006234..34006258 (25 bp)
GGTATTATCTGAACCTACCGTCCAT
LOC_Os01g58270
OsAffx.23836.1.S1_at--204--451Chr01:34006257..34006281 (25 bp)
ATCTCAGTTCCCGATCTTAGGTATC
LOC_Os01g58270
OsAffx.23836.1.S1_at--326--10051Chr01:34006274..34006298 (25 bp)
TAGGTATCCGGTCGTCGTATCAAGA
LOC_Os01g58270
OsAffx.23836.1.S1_at--525--6651Chr01:34006320..34006344 (25 bp)
GTTGATGCTGTTTACCACGCTGCAA
LOC_Os01g58270
OsAffx.23836.1.S1_at--876--1311Chr01:34006366..34006390 (25 bp)
AGATGGATGTTGAGCCACCTGTTCT
LOC_Os01g58270
OsAffx.23836.1.S1_at--810--4271Chr01:34006383..34006407 (25 bp)
CCTGTTCTGGTGTTCAATGCTGCAA
LOC_Os01g58270
OsAffx.23836.1.S1_at--566--8111Chr01:34006460..34006484 (25 bp)
GGACTACACGTTTGGGAGCCTTACT
LOC_Os01g58270
Target Sequence 
GAAAGCTCTGCATCCAAGCTGGTCACCTGCTGCACTAAAATCAGCCATAGTCACCACAGCATCTGTAACTGATGAGCGTG
GCATGCCCATACTGGCCGAAGGGTTGCCTCGGAAGATTGCTGACCCATTTGACTATGGAGGCGGGCACATCAACCCTAAC
AGAGCAGCTGATCCTGGCCTGATTTACGACATTGATCCAAGCGATTACAACAAATTCTTTGGATGCACTGTAAAGCCATA
TGTAAGGTGCAATGCGACATCGTTGCCTGGGTATTATCTGAACCTACCGTCCATCTCAGTTCCCGATCTTAGGTATCCGG
TCGTCGTATCAAGAACGGTCACAAATGTAGCTGAGGTTGATGCTGTTTACCACGCTGCAATCGAGAGCCCACCTGGCGTA
AAGATGGATGTTGAGCCACCTGTTCTGGTGTTCAATGCTGCAAACAAAGTTCATACGTTCCAGGTAAAGCTTTCACCTCT
ATGGAAGCTGCAGGGGGACTACACGTTTGGGAGCCTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis