Browse Element(s) Details


Os.42305.1.S1_s_at

Description gb:AK122041.1
DB_XREF= gi:37991687
TID=Os.42305.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) PDI-like protein (P0684C02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113J05, full insert sequence.
FL= gb:AK122041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5819411/11protein disulfide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42305.1.S1_s_at--681--3451Chr01:33977196..33977220 (25 bp)
CAGGTACTTCGACGTCCGGGAGATC
LOC_Os01g58194
Os.42305.1.S1_s_at--547--8611Chr01:33977279..33977303 (25 bp)
TGGTGAACCTCTACTTCGACATGGC
LOC_Os01g58194
Os.42305.1.S1_s_at--115--2711Chr01:33977409..33977433 (25 bp)
AAGCATCGTGTCTGACAAGTCGGGA
LOC_Os01g58194
Os.42305.1.S1_s_at--36--8431Chr01:33977438..33977462 (25 bp)
GGCCGTACATCTGCTGCGAGTGCGA
LOC_Os01g58194
Os.42305.1.S1_s_at--1126--4791Chr01:33977472..33977496 (25 bp)
GCTCGGTTGGGCGTACCAGTGCATC
LOC_Os01g58194
Os.42305.1.S1_s_at--986--9111Chr01:33977500..33977524 (25 bp)
TGCGGCTACGAGATACACCTCCGGT
LOC_Os01g58194
Os.42305.1.S1_s_at--123--8411Chr01:33977565..33977589 (25 bp)
GGCCCTCCAACTCGTAGTATATTGA
LOC_Os01g58194
Os.42305.1.S1_s_at--845--7491Chr01:33977607..33977631 (25 bp)
GTGGTGTGTGTCTATTGATCTGAAC
LOC_Os01g58194
Os.42305.1.S1_s_at--1000--2191Chr01:33977630..33977654 (25 bp)
ACAAAGCTTGGGTTGCTCTTGCCAA
LOC_Os01g58194
Os.42305.1.S1_s_at--105--7511Chr01:33977687..33977711 (25 bp)
GTGGTTTCTGTACTTCTGTTATGTG
LOC_Os01g58194
Os.42305.1.S1_s_at--660--10111Chr01:33977706..33977730 (25 bp)
TATGTGTTCCTTGGCTGCAAAAGTG
LOC_Os01g58194
Target Sequence 
CAGGTACTTCGACGTCCGGGAGATCCCGACGCTGNTGGTGNNTGGGCCCGACGNCAAGACGGTGACGAGGGAGGGGAGGA
ACCTGGTGAACCTCTACTTCGACATGGCNTNCCCGTTCACCGACGAGCAGATCAGGCTGCTGCAGGAGATGGAGGACGAG
GATGCCAAGGGGTACCCGCCGTCGCTGCGCCACACCGGCCACCGCCACGAGCTAAGCATCGTGTCTGACAAGTCGGGAGG
AGGGCCGTACATCTGCTGCGAGTGCGACGAGCAGGGGCTCGGTTGGGCGTACCAGTGCATCGCCTGCGGCTACGAGATAC
ACCTCCGGTGCGGTCGGGACATGGAAGGCAGGGCGGAATAGGAGCATNGGGCCCTCCAACTCGTAGTATATTGAACTGAA
CGTGGTGTGGTGTGGTGTGTGTCTATTGATCTGAACAAAGCTTGGGTTGCTCTTGCCAAGCCTGATGGCAGAATNGATGA
GGATAACACAAGTGGTTTCTGTACTTCTGTTATGTGTTCCTTGGCTGCAAAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42305.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis