Browse Element(s) Details


Os.46305.1.S1_at

Description gb:AK122171.1
DB_XREF= gi:37991817
TID=Os.46305.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.46305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148F16, full insert sequence.
FL= gb:AK122171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0176011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g017809/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01750OsAffx.19447.1.S1_x_at11/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01750OsAffx.19447.1.S1_at9/1112+456260..456577Zinc finger, C3HC4 type family protein
LOC_Os12g01760Os.46305.1.S1_at11/1112+463699..467349Leucine Rich Repeat family protein, expressed
LOC_Os12g01770OsAffx.19448.1.S1_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.6814.2.S1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_s_at11/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.47425.1.A1_at4/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01770Os.49767.1.S1_x_at1/1112+468381..471996protein phosphatase 2c, putative, expressed
LOC_Os12g01780OsAffx.442.1.S1_x_at7/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_x_at6/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_s_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_x_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.24587.1.S1_x_at3/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.4.S1_x_at2/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.19052.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.442.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790NANA12+477528..481911retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800OsAffx.30771.2.S1_at11/1112+482987..485738DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810NANA12+487872..488606hypothetical protein
LOC_Os12g01820Os.53829.1.S1_at3/1112+489788..492207Sodium/hydrogen exchanger family protein
LOC_Os12g01820OsAffx.5723.1.A1_x_at2/1112+489788..492207Sodium/hydrogen exchanger family protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46305.1.S1_at--146--3612Chr12:466582..466606 (25 bp)
CATTGTGCATTTAGCGGGTGTTACG
LOC_Os12g01760
Os.46305.1.S1_at--761--7712Chr12:466597..466621 (25 bp)
GGGTGTTACGCCTAATGGACTGATA
LOC_Os12g01760
Os.46305.1.S1_at--179--3872Chr12:466616..466640 (25 bp)
CTGATAGCTGCTCTTATGGTCTGTG
LOC_Os12g01760
Os.46305.1.S1_at--974--5392Chr12:466664..466688 (25 bp)
GAAGCATTCAAATCCATGGTGCCAT
LOC_Os12g01760
Os.46305.1.S1_at--269--7792Chr12:466681..466705 (25 bp)
GGTGCCATCACATATGCTCAAAGTT
LOC_Os12g01760
Os.46305.1.S1_at--597--8972Chr12:466708..466732 (25 bp)
TGAAGCCCGTGGTTGTCTTTTCCAG
LOC_Os12g01760
Os.46305.1.S1_at--1109--2611Chr12:466930..466954 (25 bp)
AACCGTGTGACGTATGGAAGCAGCA
LOC_Os12g01760
Os.46305.1.S1_at--1160--5012Chr12:466952..466976 (25 bp)
GCAGTCGCAGGATTTGCTTGTACAG
LOC_Os12g01760
Os.46305.1.S1_at--641--10032Chr12:467040..467064 (25 bp)
TAGAGCAATATCTCCAGTCCTAGAG
LOC_Os12g01760
Os.46305.1.S1_at--329--172Chr12:467156..467180 (25 bp)
ATTTTGCTTGTATGCCAGTGGAGGC
LOC_Os12g01760
Os.46305.1.S1_at--992--251Chr12:467283..467307 (25 bp)
ATATGCCTTGTTGTGCCTTTTTGAT
LOC_Os12g01760
Target Sequence 
CATTGTGCATTTAGCGGGTGTTACGCCTAATGGACTGATAGCTGCTCTTATGGTCTGTGGTTTGAGAAAAGTGAAGCTTC
ATGAAGCATTCAAATCCATGGTGCCATCACATATGCTCAAAGTTGTTGAAGCCCGTGGTTGTCTTTTCCAGTGGATTAAT
AAACCCTACCAGGTTGCGGTAGAACCGTGTGACGTATGGAAGCAGCAGTCGCAGGATTTGCTTGTACAGTGAAATGTTTC
AAAGATAAACGTTGTGGAAACTGGGGCGTGTTTTGTGGTGTTGAATTTATCTTAGAGCAATATCTCCAGTCCTAGAGAAT
GAGCTCCAAAAGTTTTGTGCCATAACTGGCTGAATAGTGTATTGAATTACTGACGGTAGTATTGTCAGAACAACATACTA
GTACTGGTATTTTGCTTGTATGCCAGTGGAGGCGAGGGAGGTTATATTCTTGATGTGTTGTATATAGCGCAGGTAGGAAT
CAACAATCAAAGAGAGATTATTGGGGTAAAGCATGTAGTAAGTGTGGAGTATGTGATATGCCTTGTTGTGCCTTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis