Browse Element(s) Details


Os.54332.1.S1_at

Description gb:AK103426.1
DB_XREF= gi:32988635
TID=Os.54332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128L01, full insert sequence.
FL= gb:AK103426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0185011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01780OsAffx.442.1.S1_x_at7/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_x_at6/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_s_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.2.S1_x_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.1.S1_at4/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.24587.1.S1_x_at3/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.30226.4.S1_x_at2/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.19052.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01780OsAffx.442.1.S1_at1/1112+472751..476819retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01790NANA12+477528..481911retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01800OsAffx.30771.2.S1_at11/1112+482987..485738DNA cytosine methyltransferase Zmet3, putative
LOC_Os12g01810NANA12+487872..488606hypothetical protein
LOC_Os12g01820Os.53829.1.S1_at3/1112+489788..492207Sodium/hydrogen exchanger family protein
LOC_Os12g01820OsAffx.5723.1.A1_x_at2/1112+489788..492207Sodium/hydrogen exchanger family protein
LOC_Os12g01840OsAffx.31544.1.S1_at11/1112+493758..494114hypothetical protein
LOC_Os12g01830Os.16506.1.A1_at11/1112+493933..498310nuclease, putative, expressed
LOC_Os12g01830Os.51492.1.S1_at1/1112+493933..498310nuclease, putative, expressed
LOC_Os12g01850Os.54332.1.S1_at11/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01850OsAffx.31545.1.S1_x_at6/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01850OsAffx.19826.2.S1_at1/1112+498850..502128pentatricopeptide, putative, expressed
LOC_Os12g01860NANA12+503097..506429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.47463.1.S1_x_at6/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01870Os.14491.2.S1_x_at5/1112+507740..512526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g01880Os.55160.1.S1_at11/1112+514426..516055expressed protein
LOC_Os12g01890OsAffx.31545.2.S1_x_at11/1112+520227..521682hypothetical protein
LOC_Os12g01890OsAffx.31545.2.S1_at11/1112+520227..521682hypothetical protein
LOC_Os12g01900Os.50793.1.S1_x_at10/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.50793.1.S1_at7/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900Os.27583.1.S1_at2/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed
LOC_Os12g01900OsAffx.31930.1.S1_x_at1/1112+523318..529565retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54332.1.S1_at--209--6871Chr12:499168..499192 (25 bp)
GTTTGGAGGCACTTCTATGCTTCAC
LOC_Os12g01850
Os.54332.1.S1_at--1146--3311Chr12:499159..499183 (25 bp)
CACTTCTATGCTTCACTTCTTTTGA
LOC_Os12g01850
Os.54332.1.S1_at--889--5031Chr12:499097..499121 (25 bp)
GCAGTTGCAGCTAAATATTCCTTCA
LOC_Os12g01850
Os.54332.1.S1_at--471--252Chr12:499029..499053 (25 bp)
ATATCTCTTCAAGTGATTGGTTCCA
LOC_Os12g01850
Os.54332.1.S1_at--908--8572Chr12:499012..499036 (25 bp)
TGGTTCCAACCAAGACACACACATG
LOC_Os12g01850
Os.54332.1.S1_at--961--6451Chr12:498984..499008 (25 bp)
GATAAACTATTTCTTCCCCTTCAGA
LOC_Os12g01850
Os.54332.1.S1_at--373--10511Chr12:498965..498989 (25 bp)
TTCAGACAATCTGCACCGGTAATTG
LOC_Os12g01850
Os.54332.1.S1_at--161--4531Chr12:498953..498977 (25 bp)
GCACCGGTAATTGTTGATCCTTCTG
LOC_Os12g01850
Os.54332.1.S1_at--854--4311Chr12:498935..498959 (25 bp)
CCTTCTGATGCTTCTTTTGAATGTT
LOC_Os12g01850
Os.54332.1.S1_at--795--3591Chr12:498899..498923 (25 bp)
CATTCTCTTTTGTTCTACTGCTATA
LOC_Os12g01850
Os.54332.1.S1_at--170--6811Chr12:498871..498895 (25 bp)
GTTTTTGACTTCTCAACAGTGGTAA
LOC_Os12g01850
Target Sequence 
GTTTGGAGGCACTTCTATGCTTCACTTCTTTTGAAATGCACAACTTTTAAAGCACAAATAAAGGATGGATTGCAGTTGCA
GCTAAATATTCCTTCAAGTGCTTCATGATTTGTGCAATTATTTAAACAGAAAGGAATATATATCTCTTCAAGTGATTGGT
TCCAACCAAGACACACACATGTAGGATAAACTATTTCTTCCCCTTCAGACAATCTGCACCGGTAATTGTTGATCCTTCTG
ATGCTTCTTTTGAATGTTGTACTTATTTTCATTCTCTTTTGTTCTACTGCTATATATGTTTTTGACTTCTCAACAGTGGT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis