Browse Element(s) Details


OsAffx.21172.1.S1_at

Description gb:NM_193682.1
DB_XREF= gi:34914447
GEN=P0516D04.28
TID=OsAffx.21172.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.28 (P0516D04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3400010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.20497.1.S1_at3/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.21754.1.S1_x_at2/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.22387.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.3348.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.31287.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33970OsAffx.9949.1.S1_at1/111+19022177..19026338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33980NANA1+19029112..19029333hypothetical protein
LOC_Os01g33990OsAffx.23502.2.S1_at6/111+19030303..19033308transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34000OsAffx.21172.1.S1_at10/111+19037627..19038616hypothetical protein
LOC_Os01g34010Os.36245.2.S1_at10/111+19046792..19049950expressed protein
LOC_Os01g34010Os.52455.1.S1_at1/111+19046792..19049950expressed protein
LOC_Os01g34020NANA1+19054772..19054993transposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.3.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.22711.1.S1_x_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34030OsAffx.20380.2.S1_at1/111+19058064..19062002retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.1.S1_at11/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.3.S1_x_at4/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_x_at3/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.20729.1.S1_x_at2/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.4.S1_at1/111+19062537..19068571retrotransposon protein, putative, unclassified
LOC_Os01g34040OsAffx.21171.5.S1_x_at1/111+19062537..19068571retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21172.1.S1_at--102--1711Chr01:19037657..19037681 (25 bp)
ACCAATGTAGCTGCAGAAGTACTTG
LOC_Os01g34000
OsAffx.21172.1.S1_at--707--2831Chr01:19037673..19037697 (25 bp)
AAGTACTTGGGCTGCCAGAGGCGAA
LOC_Os01g34000
OsAffx.21172.1.S1_at--391--9191Chr01:19037685..19037709 (25 bp)
TGCCAGAGGCGAAGCTGAACTGGAT
LOC_Os01g34000
OsAffx.21172.1.S1_at--755--1951Chr01:19037703..19037727 (25 bp)
ACTGGATGATACTGCGCTGGGTGTT
LOC_Os01g34000
OsAffx.21172.1.S1_at--1012--311Chr01:19037711..19037735 (25 bp)
ATACTGCGCTGGGTGTTCATCGACA
LOC_Os01g34000
OsAffx.21172.1.S1_at--1067--9151Chr01:19037715..19037739 (25 bp)
TGCGCTGGGTGTTCATCGACAAGTT
LOC_Os01g34000
OsAffx.21172.1.S1_at--123--7751Chr01:19037722..19037746 (25 bp)
GGTGTTCATCGACAAGTTGATCAGC
LOC_Os01g34000
OsAffx.21172.1.S1_at--204--4091Chr01:19037731..19037755 (25 bp)
CGACAAGTTGATCAGCAGCTTCGGG
LOC_Os01g34000
OsAffx.21172.1.S1_at--631--7571Chr01:19037754..19037778 (25 bp)
GGGCGTTGGCACTCGCTTGGGCCAC
LOC_Os01g34000
OsAffx.21172.1.S1_at--892--91Chr01:19037797..19037821 (25 bp)
ATTCTCCACCCTCATAAAACAGAAG
LOC_Os01g34000
OsAffx.21172.1.S1_at--1039--5311Chr01:19039318..19039342 (25 bp)
GAAGGGACGGCTGTCGAGGCCGATG
NONE
Target Sequence 
ACCAATGTAGCTGCAGAAGTACTTGGGCTGCCAGAGGCGAAGCTGAACTGGATGATACTGCGCTGGGTGTTCATCGACAA
GTTGATCAGCAGCTTCGGGGCGTTGGCACTCGCTTGGGCCACCATCGTCCTGCTCGGTGGATTCTCCACCCTCATAAAAC
AGAAGGATTTCTGGTTCGTCACCATCATCTCCTTCATGGAAGCTGCCAGNTNNNNNNNNNNNNNNGGCGCCTTCGCCGAG
AGGGAGGAAGGGACGGCTGTCGAGGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis