Browse Element(s) Details


OsAffx.21174.1.S1_at

Description gb:NM_193676.1
DB_XREF= gi:34914435
GEN=P0516D04.18
TID=OsAffx.21174.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.18 (P0516D04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g339405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21174.1.S1_at--110--5931NONE
GAGCTTGTCAGGAGATCATCTATGG
NONE
OsAffx.21174.1.S1_at--826--2236Chr12:4250581..4250623 (25 bp)
ACAATCTACGAAGCCACAAGCCAAT
NONE
OsAffx.21174.1.S1_at--879--4392Chr03:12012326..12012347 (22 bp)
GCCACAAGCCAATATGCTGCCAGAT
NONE
OsAffx.21174.1.S1_at--586--10133Chr11:15201558..15201996 (25 bp)
TATGCTGCCAGATCTCGACATCAGA
NONE
OsAffx.21174.1.S1_at--483--1352Chr03:12012357..12012381 (25 bp)
AGAGATGAGCCTAGCCATACCCCAT
NONE
OsAffx.21174.1.S1_at--1122--3531Chr01:18993173..18993197 (25 bp)
CATCCGGTGCCTACGGGAGCTGGCA
LOC_Os01g33940
OsAffx.21174.1.S1_at--694--7995Chr08:20237842..20237861 (20 bp)
GGATGTAGAGCTATTACCTGTAATA
NONE
OsAffx.21174.1.S1_at--61--1751Chr01:18992954..18992978 (25 bp)
ACCTGTAATATAATGGGCCTGAACC
NONE
OsAffx.21174.1.S1_at--929--8611Chr01:18992941..18992965 (25 bp)
TGGGCCTGAACCTTTATAAAAATCT
NONE
OsAffx.21174.1.S1_at--503--3294Chr10:4779855..4779874 (20 bp)
CAAATACCGTAGTCGCGATATCAGA
NONE
OsAffx.21174.1.S1_at--492--4631Chr01:18992839..18992863 (25 bp)
GCGATATCAGACGTCGACATCTAGG
NONE
Target Sequence 
GAGCTTGTCAGGAGATCATCTATGGATATAAATACAAGCCCCCTAGGAGGAGAGGGGAGACACCCACCACAATCTACGAA
GCCACAAGCCAATATGCTGCCAGATCTCGACATCAGAGATGAGCCTAGCCATACCCCATCCGGTGCCTACGGGAGCTGGC
AAGAGGGATCTAGCGTTATCTCTGATCTCGACGAGTACGGATTCGAGGAGGAAGACTACCGTGTTGTTGACTATGAGTTG
NTNANNNAAGAGCAACACCGGCTTCGGCCAACAGGATGTAGAGCTATTACCTGTAATATAATGGGCCTGAACCTTTATAA
AAATCTCTGTCTCCATCTCTTTTACCTCAATCTCGCATATACCCTGGTACCAACGATCCCCATACCATCCAAATACCGTA
GTCGCGATATCAGACGTCGACATCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis