Browse Element(s) Details


OsAffx.21174.2.S1_at

Description gb:NM_193677.1
DB_XREF= gi:34914437
GEN=P0516D04.19
TID=OsAffx.21174.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0516D04.19 (P0516D04.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g339404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21174.2.S1_at--936--3951Chr01:18995207..18995231 (25 bp)
CGGATGTGGCGACGGCGGCAAAGGC
NONE
OsAffx.21174.2.S1_at--540--7571Chr01:18994745..18994767 (23 bp)
GGGCTCAACCTGCTGCTCTAACCGG
NONE
OsAffx.21174.2.S1_at--101--1771Chr01:18994738..18994762 (25 bp)
ACCTGCTGCTCTAACCGGCAAGGAA
NONE
OsAffx.21174.2.S1_at--86--4811Chr01:18994731..18994755 (25 bp)
GCTCTAACCGGCAAGGAAGCAAAGA
NONE
OsAffx.21174.2.S1_at--457--3293Chr10:16835595..16835619 (25 bp)
CAAAGATGGTGCTGTTATGGAGGAA
NONE
OsAffx.21174.2.S1_at--55--3531NONE
CATGAGCTTGTCAGGGAGCTGCAAT
NONE
OsAffx.21174.2.S1_at--741--4931NONE
GCTTGTCAGGGAGCTGCAATGCCCT
NONE
OsAffx.21174.2.S1_at--678--9631Chr01:18993657..18993677 (21 bp)
TCAGGGAGCTGCAATGCCCTGGGAC
LOC_Os01g33940
OsAffx.21174.2.S1_at--991--4571Chr01:18993577..18993601 (25 bp)
GCGGTTCACGTTGGCGCCGGTGGCC
LOC_Os01g33940
OsAffx.21174.2.S1_at--103--4071Chr01:18993515..18993539 (25 bp)
CGAGGCCAGCAACCCTAGTGTCAGG
LOC_Os01g33940
OsAffx.21174.2.S1_at--454--4411Chr01:18993511..18993535 (25 bp)
GCCAGCAACCCTAGTGTCAGGGTTA
LOC_Os01g33940
Target Sequence 
CGGATGTGGCGACGGCGGCAAAGGCCCGCGGGGCTCAACCTGCTGCTCTAACCGGCAAGGAAGCAAAGATGGTGCTGTTA
TGGAGGAAGAAAAGACCCACGAGCAGGAAGACGTAGTCGAGCAGCACAGTTCAGAGGCATCGTCAAGAACAGAGGAGGAG
GGGATACACGCGCTTGACCCGAGTTGGAAGCCGAGGAGAGAGAGAGAGAGAGAGAGGATATTCTCGCCGCCGGCGAGCAC
CGTCGTACCCGTGCCACCCTCTTCGCATGTATGGAGGAATCCAATGCGGCGGCGGCGGCGGCCAAACGGCGAGACCCCCG
GCGGCGTGCTCCCTGCCAGCTCTGCTGGCAACGGCGGCAGCCCTCAGCCTGCTGCAGCTCTTCATGAGCTTGTCAGGGAG
CTGCAATGCCCTGGGACGGCGGTGGCTCCCGTCGGCACCGGCGTTCCTAGGGGCTGCGGCGGAGAAACGGCGGCGGTTCA
CGTTGGCGCCGGTGGCCCTGGGGCCGCGAGCCCCGGGATGGCAGCGGCTCCCGCCGAGGCCAGCAACCCTAGTGTCAGGG
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21174.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis