Browse Element(s) Details


OsAffx.23500.1.S1_x_at

Description tigr:9629.m03182
TID=OsAffx.23500.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3393011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33869OsAffx.23497.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869Os.50839.1.S1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.2147.1.A1_at11/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_x_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8937.1.S1_at9/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.8938.1.S1_at5/111+18952967..18968608expressed protein
LOC_Os01g33869Os.27440.1.S1_at4/111+18952967..18968608expressed protein
LOC_Os01g33869Os.17937.3.S1_at1/111+18952967..18968608expressed protein
LOC_Os01g33869OsAffx.25952.1.S1_s_at1/111+18952967..18968608expressed protein
LOC_Os01g33900NANA1+18976867..18977097hypothetical protein
LOC_Os01g33910OsAffx.11307.1.S1_at11/111+18979073..18979777hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33920OsAffx.23499.1.S1_x_at11/111+18985249..18985539hypothetical protein
LOC_Os01g33930OsAffx.23500.1.S1_at11/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.23500.1.S1_x_at11/111+18985940..18992315expressed protein
LOC_Os01g33930Os.26912.1.A1_x_at7/111+18985940..18992315expressed protein
LOC_Os01g33930OsAffx.14629.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33930Os.10728.1.S1_at1/111+18985940..18992315expressed protein
LOC_Os01g33940OsAffx.21174.2.S1_x_at8/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.1.S1_at5/111+18993085..18994720hypothetical protein
LOC_Os01g33940OsAffx.21174.2.S1_at4/111+18993085..18994720hypothetical protein
LOC_Os01g33950OsAffx.23501.1.S1_x_at11/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33950OsAffx.23501.2.S1_at9/111+18998075..19002520Leucine Rich Repeat family protein, expressed
LOC_Os01g33960OsAffx.32312.1.A1_at10/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.2.S1_x_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.2.S1_at5/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.10837.1.S1_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19953.5.S1_x_at4/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.1869.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19842.1.S1_at3/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.19421.2.S1_at2/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.18924.4.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.31898.1.S1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33960OsAffx.32283.1.A1_at1/111+19010862..19020435transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23500.1.S1_x_at--277--9931Chr01:18991724..18991748 (25 bp)
TACTGGAGTCCTTTATTGGGCTCAC
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--785--31Chr01:18991738..18991762 (25 bp)
ATTGGGCTCACCGTGCAAATTTGCA
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--304--831Chr01:18991777..18991801 (25 bp)
ATGGTTTTCACCGATGCACTCAGGA
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--836--3471Chr01:18991797..18991821 (25 bp)
CAGGAGTGCCAATATTACAGTTGAC
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--315--3111Chr01:18991807..18991831 (25 bp)
AATATTACAGTTGACGAGTTCGTGC
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--109--7451Chr01:18991855..18991879 (25 bp)
GTGTACAAGTCTCCAACTGCTGATT
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--285--5431Chr01:18991932..18991956 (25 bp)
GAACCCGGCGTATATTGTGGTGTTT
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--295--111Chr01:18992033..18992057 (25 bp)
ATTCGGGTGTTGGTGCTTTTGAGCA
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--354--6111Chr01:18992062..18992086 (25 bp)
GAGTCCATTTCTAGTATTGTGAGCA
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--281--7311Chr01:18992187..18992211 (25 bp)
GTGCGGGTGAGTTATCCATGTGATT
LOC_Os01g33930
OsAffx.23500.1.S1_x_at--1112--731Chr01:18992233..18992257 (25 bp)
ATGTTATGTTATTCTGCATTTCGAA
LOC_Os01g33930
Target Sequence 
TACTGGAGTCCTTTATTGGGCTCACCGTGCAAATTTGCACCAACGGGGATGAAATGGTTTTCACCGATGCACTCAGGAGT
GCCAATATTACAGTTGACGAGTTCGTGCTGAAGCTTAAGATGATATTAACTGTGTACAAGTCTCCAACTGCTGATTTTCC
AGGGGTAAGAAGGGTTGTAATTCAGCAAATGAATTGGATGATGGAAAAGAACCCGGCGTATATTGTGGTGTTTAAGAAGC
ACGAAATGGACATCATACTTAAAGAAACAGCAGAGACGGCAACAAAGATTGAAAATTTTTTGTTGTTCCATTCGGGTGTT
GGTGCTTTTGAGCATGAAGAGTCCATTTCTAGTATTGTGAGCAAGTCACTGGGACTGATTACAGGTAGTTTTGCTTAAGG
AGCCAATAGTTTGGGGCATCAGCCTAATTAAAGTAAGTTTGTGATGTGTGTGTGTGACGGTGTGTGCGGGTGAGTTATCC
ATGTGATTCGAACAAATTTAGGGTATTGTATGTTATGTTATTCTGCATTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23500.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis