Browse Element(s) Details


Os.27131.1.S1_at

Description gb:CB641995
DB_XREF= gi:29636986
DB_XREF=OSJNEb01P03.r
CLONE=OSJNEb01P03
TID=Os.27131.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.27131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1015F07.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0349011/11expressed protein
LOC_Os12g411301/11hypothetical protein
LOC_Os05g337001/114F5 protein family protein
LOC_Os11g084701/11Heat shock cognate 70 kDa protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03430Os.27444.1.S1_at11/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430Os.49363.2.S1_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03430OsAffx.941.1.S1_x_at1/113+1454680..1461695CBS domain-containing protein, putative, expressed
LOC_Os03g03440Os.14926.1.S1_at11/113+1462557..1464442expressed protein
LOC_Os03g03440Os.14926.2.S1_x_at10/113+1462557..1464442expressed protein
LOC_Os03g03450Os.26406.1.S1_at11/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03450Os.26406.2.S1_x_at10/113+1463965..1469004Anthranilate phosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_x_at11/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460OsAffx.12720.1.S1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03460Os.40094.1.A1_at10/113+1472653..1475590C-terminal binding protein, putative, expressed
LOC_Os03g03470Os.9765.1.S1_a_at11/113+1478009..1482577expressed protein
LOC_Os03g03470Os.9765.2.S1_at10/113+1478009..1482577expressed protein
LOC_Os03g03480OsAffx.3123.1.S1_at11/113+1483685..1484395uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g03490Os.27131.1.S1_at11/113+1486445..1488013expressed protein
LOC_Os03g03500Os.33603.1.S1_at11/113+1489666..1490917heavy metal-associated domain containing protein, expressed
LOC_Os03g03510OsAffx.12721.1.S1_at11/113+1492992..1497363CIPK-like protein 1, putative, expressed
LOC_Os03g03520OsAffx.12722.1.S1_at10/113+1499506..1501322hypothetical protein
LOC_Os03g03520Os.56075.1.S1_at9/113+1499506..1501322hypothetical protein
LOC_Os03g03530Os.35218.2.S1_x_at10/113+1503735..1505379hypothetical protein
LOC_Os03g03530Os.35218.1.S1_at7/113+1503735..1505379hypothetical protein
LOC_Os03g03540OsAffx.22284.1.S1_at11/113+1507610..1509967no apical meristem, putative, expressed
LOC_Os03g03540OsAffx.22284.1.S1_x_at11/113+1507610..1509967no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27131.1.S1_at--939--4111Chr03:1487438..1487462 (25 bp)
CGAATGCGGCGCGACACATCGGCGA
LOC_Os03g03490
Os.27131.1.S1_at--521--3931Chr03:1487444..1487468 (25 bp)
CGGCGCGACACATCGGCGAGCTAGA
LOC_Os03g03490
Os.27131.1.S1_at--385--3515Chr05:19751537..19751561 (25 bp)
CATGGGCCCCACCTTTTCTTATTAT
LOC_Os05g33700
Os.27131.1.S1_at--1019--153Chr03:1487711..1487735 (25 bp)
ATTATTTTTTTATAGCTGACATGTG
LOC_Os03g03490
Os.27131.1.S1_at--225--8674Chr12:14521374..14521399 (25 bp)
TGTGGGTCCCATGGTTTTTAATTAT
NONE
Os.27131.1.S1_at--968--172Chr08:16016068..16016091 (24 bp)
ATTTTTCCAGGATCCAATTGCCACA
NONE
Os.27131.1.S1_at--106--3192Chr03:1487769..1487793 (25 bp)
CAATTGCCACATAAGTGACACGTCA
LOC_Os03g03490
Os.27131.1.S1_at--840--9172Chr03:1487867..1487891 (25 bp)
TGCCGAGGGACATTTTCTGCACGGT
LOC_Os03g03490
Os.27131.1.S1_at--31--1052Chr03:1487872..1487896 (25 bp)
AGGGACATTTTCTGCACGGTTTTGT
LOC_Os03g03490
Os.27131.1.S1_at--996--7972Chr08:20029081..20029100 (20 bp)
GGATGAAAATCAAACTGGGTGACAA
NONE
Os.27131.1.S1_at--557--9694Chr10:16320727..16320846 (25 bp)
TCAAACTGGGTGACAAATTGAGGGA
NONE
Target Sequence 
CGAATGCGGCGCGACACATCGGCGAGCTAGAGGAGCGTGTCGCGCGGCTGAGGGCGGAGGCGGCGGCGCGGCAGGCGAAG
GCGCTTGCCGACCAGTTCACCGCGCGCCGTCCGCCCACCACACGCCGCCACTCCGCTTCGCCCCGCCGCCCGCCATCGCT
CCGCCCACCGCCCCCCTCTGCGCCGCCGCTCGCCGTTCTGTAGGGGAGAGAGAGAGGGGGATAGAGAGAAAAGGGGGCTG
ACATGTGGGACCACATGGGCCCCACCTTTTCTTATTATTTTTTTATAGCTGACATGTGGGTCCCATGGTTTTTAATTATT
TTTCCAGGATCCAATTGCCACATAAGTGACACGTCAATGCCACATGGGACGAGGATCTAGTCAAAGGGAGCCACGTAGGC
GCCACGTCATCCAAAACCGGACATAATACTGCCGAGGGACATTTTCTGCACGGTTTTGTAAGTTAAGGGATGNGTTGTAT
CCGGTTTTCTAGACTGAGGATGAAAATCAAACTGGGTGACAAATTGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis