Browse Element(s) Details


Os.34167.2.S1_at

Description gb:AK063804.1
DB_XREF= gi:32973822
TID=Os.34167.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0560B06.4 (P0560B06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G01, full insert sequence.
FL= gb:AK063804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g269709/11expressed protein
LOC_Os01g268529/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26920Os.12845.1.S1_at5/111+15320356..15324971expressed protein
LOC_Os01g26920Os.34167.2.S1_x_at1/111+15320356..15324971expressed protein
LOC_Os01g26930OsAffx.8908.1.S1_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.8908.1.S1_x_at11/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26930OsAffx.19407.1.S1_at1/111+15327347..15331899transposon protein, putative, Mutator sub-class
LOC_Os01g26940Os.18728.1.S1_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26940Os.18728.2.S1_x_at11/111+15333878..15340141transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g26950OsAffx.11217.1.S1_at11/111+15341578..15341850hypothetical protein
LOC_Os01g26960OsAffx.11218.1.S1_at11/111+15344972..15345250hypothetical protein
LOC_Os01g26970Os.34167.1.S1_at11/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.3.S1_x_at10/111+15346680..15350792expressed protein
LOC_Os01g26970Os.34167.2.S1_at9/111+15346680..15350792expressed protein
LOC_Os01g26980OsAffx.17848.1.S1_x_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.1.S1_at11/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.5.S1_x_at7/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.2.S1_x_at3/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980Os.54363.1.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.4.S1_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.17848.3.S1_x_at2/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26980OsAffx.11160.1.S1_s_at1/111+15352704..15363122Transposable element protein, putative, MuDR
LOC_Os01g26990Os.28943.1.S1_x_at1/111+15365310..15368376retrotransposon protein, putative, unclassified
LOC_Os01g27000NANA1+15368998..15374622retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34167.2.S1_at--494--6551NONE
GATTATGTAGTGAGGATGCTGCTTC
NONE
Os.34167.2.S1_at--638--7352Chr01:15346777..15346801 (25 bp)
GTGAATGTGATTCCTCTGGCAGTTG
LOC_Os01g26970
Os.34167.2.S1_at--322--9012Chr01:15346776..15346800 (25 bp)
TGAATGTGATTCCTCTGGCAGTTGT
LOC_Os01g26970
Os.34167.2.S1_at--1126--5272Chr01:15346775..15346799 (25 bp)
GAATGTGATTCCTCTGGCAGTTGTT
LOC_Os01g26970
Os.34167.2.S1_at--1137--2972Chr01:15346774..15346798 (25 bp)
AATGTGATTCCTCTGGCAGTTGTTT
LOC_Os01g26970
Os.34167.2.S1_at--59--10332Chr01:15346749..15346773 (25 bp)
TTTCTTTGGTTATTCTCAGTATGTG
LOC_Os01g26970
Os.34167.2.S1_at--320--10572Chr01:15346748..15346772 (25 bp)
TTCTTTGGTTATTCTCAGTATGTGA
LOC_Os01g26970
Os.34167.2.S1_at--61--7892Chr01:15346742..15346766 (25 bp)
GGTTATTCTCAGTATGTGAGAGCAT
LOC_Os01g26970
Os.34167.2.S1_at--744--3752Chr01:15346735..15346759 (25 bp)
CTCAGTATGTGAGAGCATATGTGTT
LOC_Os01g26970
Os.34167.2.S1_at--237--3592Chr01:15346684..15346708 (25 bp)
CATTATTACATAATCGACTGTACCA
LOC_Os01g26970
Os.34167.2.S1_at--29--152Chr01:15346680..15346704 (25 bp)
ATTACATAATCGACTGTACCATACC
NONE
Target Sequence 
GATTATGTAGTGAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTNTTGNTTGT
GACAATCAGCCTCTATCTAGGCAAGAAATNATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTT
CACAGGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATC
CAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAA
AGCATTGATGTGAATGTGATTCCTCTGGCAGTTGTTTTTTCTTTGGTTATTCTCAGTATGTGAGAGCATATGTGTTGATT
TGATTTGTAATGTATGATAATTCATTATTACATAATCGACTGTACCATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis