Browse Element(s) Details


OsAffx.26144.3.S1_s_at

Description tigr:9632.m02370
TID=OsAffx.26144.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0331011/11transposon protein, putative, Mutator sub-class
LOC_Os06g3070011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g2531011/11hypothetical protein
LOC_Os07g0340011/11transposon protein, putative, Mutator sub-class
LOC_Os10g0565011/11transposon protein, putative, Mutator sub-class
LOC_Os07g0349011/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03319OsAffx.16067.1.S1_at2/117+1333665..1334266SCP-like extracellular protein, expressed
LOC_Os07g03328OsAffx.28247.1.S1_x_at11/117+1334496..1334942hypothetical protein
LOC_Os07g03337Os.46306.1.S1_x_at8/117+1336276..1339101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.43567.1.S1_x_at6/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.29987.1.S1_at4/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.38172.1.S1_x_at3/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03350Os.53217.1.S1_x_at1/117+1341718..1346276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g03359OsAffx.22848.3.S1_x_at2/117+1348593..1349350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03368Os.11164.1.S1_at9/117+1350620..1351099Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g03377Os.51641.1.S1_x_at4/117+1353977..1354447Basic form of pathogenesis-related protein 1 precursor, putative
LOC_Os07g03390OsAffx.22759.1.S1_at4/117+1357627..1359150retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26144.3.S1_s_at--811--6236Chr10:2803500..2803524 (25 bp)
GATGGTAAATTCACCGCTGAGGTAC
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--648--116Chr10:2803492..2803516 (25 bp)
ATTCACCGCTGAGGTACACCATGGT
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--480--5156Chr10:2803445..2803469 (25 bp)
GCAACAGGGCATATGTAGATCAAAC
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--351--3176Chr10:2803416..2803440 (25 bp)
AATTGGATTGACCACTGTGAAGCAA
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--445--10356Chr10:2803360..2803384 (25 bp)
TTTAGCTATGCTTGGGTATGATATG
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--493--2936Chr10:2803323..2803347 (25 bp)
AAGGCTTATTGGTTGCTCCCTGGAA
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--263--2016Chr10:2803296..2803320 (25 bp)
ACTCTTGAAGATGGCCTTAGGGTTA
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--302--6236Chr10:2803287..2803311 (25 bp)
GATGGCCTTAGGGTTATATCTACTA
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--447--7676Chr10:2803277..2803301 (25 bp)
GGGTTATATCTACTAGGGCTGACTT
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--281--3737Chr10:2803268..2803292 (25 bp)
CTACTAGGGCTGACTTTGAAGTGAT
LOC_Os10g05650
OsAffx.26144.3.S1_s_at--685--6297Chr10:2803167..2803191 (25 bp)
GATGATGTAGTAGCTAATCCTATTA
LOC_Os10g05650
Target Sequence
GATGGTAAATTCACCGCTGAGGTACACCATGGTGGTTTTTTTGTTGGTCAGGGTAGCAACAGGGCATATGTAGATCAAAC
GATAAATTGGATTGACCACTGTGAAGCAAGAACATGGGATATTGTTTGTTTGGATGAATTTTTAGCTATGCTTGGGTATG
ATATGACTCCAGATTTTAAGGCTTATTGGTTGCTCCCTGGAAAGACTCTTGAAGATGGCCTTAGGGTTATATCTACTAGG
GCTGACTTTGAAGTGATGAAATCAGTTGTGCACAAGGTTAAGAATTTTATTATCTACTTTGATCAGGGTGACACAATTGC
AGGTGTAGATTGGGATGATGTAGTAGCTAATCCTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26144.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis