Browse Element(s) Details


Os.27583.1.S1_at

Description gb:AK120107.1
DB_XREF= gi:37989730
TID=Os.27583.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023K14, full insert sequence.
FL= gb:AK059364.1 gb:AK065601.1 gb:AK120107.1 gb:AK072035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0185011/11Protein of unknown function, DUF614 containing protein, expressed
LOC_Os12g019002/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01800NANA11+426040..426741hypothetical protein
LOC_Os11g01810OsAffx.30771.1.S1_at11/1111+427376..431591hypothetical protein
LOC_Os11g01810OsAffx.30771.2.S1_at7/1111+427376..431591hypothetical protein
LOC_Os11g01820Os.53829.1.S1_at11/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01820OsAffx.5723.1.A1_x_at2/1111+434169..436939Sodium/hydrogen exchanger family protein, expressed
LOC_Os11g01830Os.51935.1.S1_at9/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01830Os.16506.1.A1_at3/1111+438000..443866Staphylococcal nuclease homologue family protein, expressed
LOC_Os11g01836OsAffx.31545.1.S1_x_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01836OsAffx.31545.1.S1_at11/1111+444991..446928vegetative storage protein, putative
LOC_Os11g01842OsAffx.31545.2.S1_x_at6/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01842OsAffx.31545.2.S1_at4/1111+447406..448881Protein of unknown function, DUF614 containing protein
LOC_Os11g01850Os.27583.1.S1_at11/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01850Os.50793.1.S1_x_at4/1111+450638..452819Protein of unknown function, DUF614 containing protein, expressed
LOC_Os11g01860OsAffx.18630.1.S1_at11/1111+453617..455863pentatricopeptide, putative, expressed
LOC_Os11g01869OsAffx.30773.2.S1_x_at11/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.1.S1_x_at7/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.51834.1.S1_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869OsAffx.30773.3.S1_x_at4/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01869Os.3740.1.S1_x_at3/1111+456120..460681Double-stranded RNA binding motif family protein, expressed
LOC_Os11g01880OsAffx.6960.1.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_x_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_s_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.3.S1_at11/1111+476028..483647hypothetical protein
LOC_Os11g01880OsAffx.6960.1.S1_x_at10/1111+476028..483647hypothetical protein
LOC_Os11g01880Os.16743.1.S1_at2/1111+476028..483647hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27583.1.S1_at--895--9611Chr11:451190..451214 (25 bp)
TCATGGCAGCATCAGAGGGATCAAA
LOC_Os11g01850
Os.27583.1.S1_at--58--712Chr12:523559..523583 (25 bp)
ATGAGGAGATGGTTCCACCGGCTGT
LOC_Os12g01900
Os.27583.1.S1_at--712--10671Chr11:451133..451157 (25 bp)
TTCCACCGGCTGTACAGGTTGTGGT
LOC_Os11g01850
Os.27583.1.S1_at--19--2852Chr12:523517..523541 (25 bp)
AAGTCGTCGTTGAAGGTGATAAATC
LOC_Os12g01900
Os.27583.1.S1_at--125--4471Chr11:451033..451057 (25 bp)
GCCTCTTCCGGAATCGGTGGTGATT
LOC_Os11g01850
Os.27583.1.S1_at--329--4951Chr11:450861..450885 (25 bp)
GCATACAAAAGGCTACAGATTCAAT
LOC_Os11g01850
Os.27583.1.S1_at--992--6731Chr11:450765..450789 (25 bp)
GTTCATTCTTTGGAGTTTGGGTGTA
LOC_Os11g01850
Os.27583.1.S1_at--207--7451Chr11:450745..450769 (25 bp)
GTGTACATAGGCATACTGCTGGCAT
LOC_Os11g01850
Os.27583.1.S1_at--834--1291Chr11:450718..450742 (25 bp)
AGATGCCACAGGATTTTGAAGGGAT
LOC_Os11g01850
Os.27583.1.S1_at--1140--6851Chr11:450692..450716 (25 bp)
GTATATTTGTAATCCGTTCCCAGCT
LOC_Os11g01850
Os.27583.1.S1_at--1047--4751Chr11:450670..450694 (25 bp)
GCTGCAATTGCACCTTGGAAATAGT
LOC_Os11g01850
Target Sequence 
TCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTG
GTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCC
TCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGG
TGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAGTGAGGC
ACAGAAAATGCATACAAAAGGCTACAGATTCAATAGCTACTTAGCTAGATGACTGAATTCTCTCATCTTTCTCCATTTCT
TTTTGTTGGTTGTGATCGAGAGGAAGTTCATTCTTTGGAGTTTGGGTGTACATAGGCATACTGCTGGCATAAAGATGCCA
CAGGATTTTGAAGGGATTGTATATTTGTAATCCGTTCCCAGCTGCAATTGCACCTTGGAAATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis