Browse Element(s) Details


OsAffx.24466.1.S1_x_at

Description tigr:9630.m02645
TID=OsAffx.24466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2782011/11hypothetical protein
LOC_Os02g278802/11EF hand family protein
LOC_Os02g279401/11Calcineurin B-like protein 3, putative
LOC_Os02g279201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27769Os.9200.1.S1_at1/112+16439919..16440360NA
LOC_Os02g27780OsAffx.12235.1.S1_at11/112+16443107..16443529hypothetical protein
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24466.1.S1_x_at--419--531Chr02:16464645..16464669 (25 bp)
ATCCCTAACGTCACCAATGACGGCG
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--172--9811Chr02:16464650..16464674 (25 bp)
TAACGTCACCAATGACGGCGCTGGA
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--1008--1891Chr02:16464652..16464676 (25 bp)
ACGTCACCAATGACGGCGCTGGAAA
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--1050--3051Chr02:16464659..16464683 (25 bp)
CAATGACGGCGCTGGAAACCCGGAA
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--1158--8931Chr02:16464662..16464686 (25 bp)
TGACGGCGCTGGAAACCCGGAAGCT
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--98--1931Chr02:16464664..16464688 (25 bp)
ACGGCGCTGGAAACCCGGAAGCTCT
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--630--3911Chr02:16464665..16464689 (25 bp)
CGGCGCTGGAAACCCGGAAGCTCTC
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--605--9331Chr02:16464688..16464824 (25 bp)
TCGCCGCCCAAACCATATACACCGT
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--209--9872Chr02:16464818..16464841 (24 bp)
TACACCGTCAACGAGATTGAAGCCT
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--856--9712Chr02:16464854..16464878 (25 bp)
TCAAGAGGATCGATGGTGCCGTCAT
LOC_Os02g27820
OsAffx.24466.1.S1_x_at--420--3633Chr02:16465333..16465357 (25 bp)
CTTGAGAGTATTTGGTCCTGAAAAA
LOC_Os02g27820
Target Sequence 
ATCCCTAACGTCACCAATGACGGCGCTGGAAACCCGGAAGCTCTCGCCGCCCAAACCATATACACCGTCAACGAGATTGA
AGCCTTGTATGAGCTTTTCAAGAGGATCGATGGTGCCGTCATCGAAGATGGCAAGATCAACATGGAAGAGTTCAACTTGA
GAGTATTTGGTCCTGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24466.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis